Programmes informatiques

  Accueil de l'équipe

 Dépôt GitHub

Manuscrit “Pinzón et al., 2018”

Téléchargement des protéomes prédits de Métazoaires

Recherche de candidats RdRP et re-séquençage du locus “BL09945”

Phylogénie de la famille des “RdRP eucaryotiques”

Analyse du Small RNA-Seq de Branchiostoma lanceolatum

Nom de fichier Taille
A file of unknown type 03_Small_RNA-Seq.md 29.47 KB
A Compressed file B_lanceolatum_genome_bowtie2_index.tar.bz2 776.93 MB
A Compressed file B_lanceolatum_transcriptome_bowtie2_index.tar.bz2 152.04 MB
A Compressed file Bl71nemr.fa.bz2 128.94 MB
A file of unknown type Chef3.sh 2.67 KB
A file of unknown type Chef4.sh 2.92 KB
A file of unknown type Convincing_pre-miRNA_hairpins.fa 6.26 KB
A file of unknown type Fuses_lines_clean.pl 514 bytes
An Adobe Acrobat file Gel_purification_8h_embryos.pdf 9.57 MB
An Adobe Acrobat file Gel_purification_15h_embryos.pdf 9.6 MB
An Adobe Acrobat file Gel_purification_36h_embryos.pdf 11.19 MB
An Adobe Acrobat file Gel_purification_60h_embryos.pdf 10.16 MB
An Adobe Acrobat file Gel_purification_adult_females.pdf 9.09 MB
An Adobe Acrobat file Gel_purification_adult_males.pdf 8.48 MB
A file of unknown type Junction_and_exonic_reads_blat_output.dat 172.2 KB
A file of unknown type Module_ORF_detector.pl 2.01 KB
A file of unknown type Module_ORF_detector_lower_case.pl 2.04 KB
A file of unknown type Module_TXT_to_FA.pl 513 bytes
A file of unknown type Module_converts_fastq_to_fasta.pl 539 bytes
A file of unknown type Module_excludes_hairpin-matching_reads.pl 1.42 KB
A file of unknown type Module_extract_from_fasta.pl 572 bytes
A file of unknown type Module_extract_from_fastq.pl 671 bytes
A file of unknown type Module_extracts_fastq_read_identifiers.pl 349 bytes
A file of unknown type Module_extracts_miRNA_hairpins.pl 1.35 KB
A file of unknown type Module_extracts_read_sequences.pl 748 bytes
A file of unknown type Module_logo_for_hairpin-matching.pl 1.89 KB
A file of unknown type Module_selects_from_blat_results.pl 4.35 KB
A file of unknown type Module_unification.pl 1.7 KB
A file of unknown type Orthologs_to_known_hairpins.fa 3.29 MB
A file of unknown type R_commands_convincing_ORF-matching_reads 1.89 KB
A file of unknown type R_commands_genomic_non_ncRNA-matching_size_dist 1.36 KB
A file of unknown type R_commands_hairpin-matching_size_dist 1.76 KB
A file of unknown type R_commands_hairpin_read_profile 2.76 KB
A file of unknown type R_commands_plot_miRNAs_in_dvpt 1.91 KB
A file of unknown type R_commands_size_distribution_September2017 4.01 KB
A file of unknown type R_commands_transcriptome_non_hairpin-matching_size_dist 1.87 KB
A file of unknown type R_commands_worm_convincing_ORF-matching_size_dist 1.88 KB
A file of unknown type R_commands_worm_extragenomic_extratranscriptomic_size_dist 1.33 KB
A file of unknown type R_commands_worm_genomic_non_ncRNA-matching_size_dist 1.34 KB
A file of unknown type R_commands_worm_hairpin-matching_size_dist 1.74 KB
A file of unknown type R_commands_worm_transcriptome_non_hairpin-matching_size_dist 1.85 KB
A file of unknown type R_commands_worm_transcriptomic_extragenomic_size_dist 1.77 KB
A file of unknown type RdRP_template_loci.bed 168 bytes
A file of unknown type Script_C_elegans.sh 6.69 KB
A file of unknown type Script_convincing_transcriptome-matching_not_matching_ncRNA_or_hairpins.sh 315 bytes
A file of unknown type Script_mapping_extragenomic_on_RdRP_template_loci.sh 713 bytes
A file of unknown type Script_mapping_on_RdRP_template_loci.sh 1.03 KB
A file of unknown type Script_miRNAs_in_development.sh 5.38 KB
A file of unknown type Script_transcriptome-matching_not_matching_ncRNA_or_hairpins.sh 1.05 KB
A file of unknown type Statistics.dat 1.08 KB
A file of unknown type Top_antisense_junction_mapped_mRNAs.dat 0 bytes
A file of unknown type Top_sense_junction_mapped_mRNAs.dat 314 bytes
A Compressed file Transcripts_with_convicing_ORFs_in_Bla_annot_final_refTranscripts.fa.bz2 10.25 MB
A Compressed file Trimmed_fastq.tar 2.44 GB
A file of unknown type abundant_B_lanceolatum_ncRNAs.fa 521.74 KB
A Compressed file blanc_evm+_rn.fa.bz2 7.72 MB
A Compressed file blat_output.psl.bz2 657.3 MB
A file of unknown type cel_abundant_ncRNAs.fa 129.46 KB
A file of unknown type cel_hairpinMar18.fa 37.51 KB
A file of unknown type hairpinMar18.fa 5.85 MB
A Text file md5sum_Seitz.txt 3.6 KB
A file of unknown type miRNA_abundance_in_development.dat 7.08 KB
A file of unknown type unified1.fa 1.1 MB

Petits ARN issus des pathogènes avérés ou potentiels

Manuscrit "Mockly et Seitz, 2018"

Manuscrit "Pinzón et al., 2017"

Scripts et données pour la préparation des 6 figures :

Conversion des fichiers FCS de cytométrie en fichiers texte

  • Script de conversion (usage : ./read_FCS.py input.fcs output.txt) : script python.